Chimera Commands Index
Usage:
preset apply type number
Usage:
preset list [ type ]
Preset with the keyword apply
applies a predefined combination of display settings.
It has the same effect as choosing the corresponding entry from the
Presets menu.
Currently presets cannot be user-defined, but
Chimera includes several presets grouped by type:
- interactive
- for interactive manipulation and analysis;
may change what items (atoms, ribbons, surfaces) are displayed
and how they are colored, and make the background black:
- 1 (ribbons)
- 2 (all atoms)
- 3 (hydrophobicity surface)
- publication
- for generating presentation and publication images;
do not change what items are displayed or their colors,
but may change their styles and make the background white:
- 1 (sihouette, rounded ribbon, sticks)
- 2 (sihouette, licorice, sticks)
- 3 (depth-cued, rounded ribbon, sticks)
- 4 (depth-cued, licorice, sticks)
Publication presets may decrease interactive performance
because finer divisions are used to depict curved objects
(molecular surfaces,
ribbons, etc.).
Individual display parameters are discussed in more detail in the
tips on preparing images.
The type can be truncated to a unique string.
The number is the ID number of the specific preset to be applied.
Preset with the keyword list
sends a list of presets of the specified type
(all types, if not specified) to the
Reply Log.
Examples:
preset apply int 1
- apply the ribbons interactive preset
preset list pub
- list all publication presets in the
Reply Log
See also:
represent,
ribrepr,
surface,
set,
mcopy,
copy,
tips on preparing images