Amino acid categories appear in the Select menu and can be used in command-line specification.
The default amino acid categories (the default schemata in ResProp) are taken from:
"Prediction of protein secondary structure and active sites using the alignment of homologous sequences," M.J. Zvelebil, G.J. Barton, W.R. Taylor, and M. J. Sternberg, J. Mol. Biol., 195, 957 (1987).
| hydrophobic | positive | negative | polar | charged | small | tiny | aromatic | aliphatic | |
|---|---|---|---|---|---|---|---|---|---|
| ALA | X | X | X | ||||||
| ARG | X | X | X | ||||||
| ASN | X | X | |||||||
| ASP | X | X | X | X | |||||
| CYS | X | X | |||||||
| GLU | X | X | X | ||||||
| GLN | X | ||||||||
| GLY | X | X | X | ||||||
| HIS | X | X | X | X | X | ||||
| ILE | X | X | |||||||
| LEU | X | X | |||||||
| LYS | X | X | X | X | |||||
| MET | X | ||||||||
| PHE | X | X | |||||||
| PRO | X | ||||||||
| SER | X | X | X | ||||||
| THR | X | X | X | ||||||
| TRP | X | X | X | ||||||
| TYR | X | X | X | ||||||
| VAL | X | X | X |