Accelerators |
|
AddAttr |
|
AddCharge |
|
AddH |
Add hydrogens to structures
|
AtomDensity |
|
Benchmark |
|
Bld2VRML |
|
BugReport |
|
BuildStructure |
|
CGLtk |
Generically useful CGL Tk additions
|
CGLutil |
Generically useful modules
|
CalcAttr |
|
Categorizer |
Categorize atoms into solvent, ligand, etc. categories
|
ChemGroup |
Find chemical groups in a structure
|
ColorSS |
|
ColorZone |
|
ConstrainedMove |
|
CrystalContacts |
|
DBPuppet |
|
DelphiViewer |
View Delphi output in Chimera
|
Demo |
|
DetectClash |
|
DockPrep |
|
EnsembleMatch |
|
FetchEDS |
|
FetchPQS |
|
FindHBond |
Find hydrogen bonds
|
FitMap |
|
FlattenIcosahedron |
|
Fourier |
|
GaussianFilter |
|
GraspSurface |
|
IMOD |
|
IcosahedralCage |
|
Icosahedron |
|
Ilabel |
|
Intersurf |
|
Lighting |
|
ListInfo |
|
MMMD |
|
MSMSSurface |
|
Mask |
|
MatchDomains |
|
MatchMaker |
|
Matrix |
|
MeasureVolume |
|
MeshToMolecule |
|
Midas |
Emulate UCSF Midas command set
|
MinrmsPlot |
|
ModUtil |
- ModUtil
- chimera utilities for Sali's Modeller
|
ModelBrowser |
|
ModelClip |
|
ModelPanel |
GUI to perform functions on models
|
MoleculeTransform |
|
Morph |
|
MorphMap |
|
MoveSelection |
|
Movie |
|
MovieRecorder |
|
MultAlignViewer |
|
MultiScale |
|
MultiscaleColor |
|
NeedlemanWunsch |
|
NucleicAcids |
|
OpenSave |
Standard open/save panels for Chimera
|
PBReader |
Show pseudobonds described in a file
|
PDBmatrices |
|
PathLength |
|
Phantom |
|
PickBlobs |
|
PipesAndPlanks |
|
PythonModel |
Access Chimera OpenGL drawing
|
ReadMS |
|
ReadSDF |
|
ReadStdin |
|
ReadXYZ |
|
ResProp |
Color residues by property (e.g. aliphatic)
|
RibbonStyleEditor |
|
Rotamers |
|
ScaleBar |
|
SessionUtil |
|
Shiny |
|
ShowAttr |
|
SimpleSession |
Save/restore most aspects of a Chimera modeling session
|
SmithWaterman |
|
SplitMap |
|
SplitMolecule |
|
StructMeasure |
Interface to structure measurements (e.g. distances, angles)
|
StructSeqAlign |
|
Surface |
|
SurfaceAreaVolume |
|
SurfaceCap |
|
SurfaceColor |
|
SurfaceDistance |
|
SurfaceZone |
|
Surfnet |
|
SwapRes |
Change residue side chains
|
SymmetryCopies |
|
Texturer |
Convenience classes for making small 2D textures
|
Trajectory |
|
UndoMove |
|
UnitCell |
|
ViewDock |
|
VolumeData |
|
VolumeEraser |
|
VolumePath |
|
VolumeSeries |
|
VolumeStatistics |
|
VolumeViewer |
|
WriteMol2 |
|
_LightViewer |
_LightViewer module
|
_align |
Interface to the C++ code for reading results from align_O_matic
|
_amber |
_amber module
|
_chimera |
Declarations of basic Chimera classes (Molecule, Atom, etc.)
|
_closepoints |
_closepoints module
|
_contour |
_contour module
|
_cubes |
_cubes module
|
_distances |
_distances module
|
_interpolate |
_interpolate module
|
_mask |
_mask module
|
_multiscale |
_multiscale module
|
_pm |
_pm module
|
_surface |
_surface module
|
_surfacecap |
_surfacecap module
|
_surfnet |
_surfnet module
|
_sw |
_sw module
|
_volume |
_volume module
|
_vrml |
_vrml module
|
blast |
|
chimera |
Chimera module
|
fonts |
|
man |
|
mmCIF |
|
otf |
|
pdborder |
|
povray-3.6 |
|
registration |
|